Getting Started

Here’s a sample region of interest to help you get started with SNP-Seek. Follow these steps one by one to learn how to effectively use the platform!

QTL of Interest: Pre-Harvest Sprouting

Publication:

Lee JS, Chebotarov D, McNally KL, Pede V, Setiyono TD, Raquid R, Hyun WJ, Jeung JU, Kohli A, Mo Y. Novel Sources of Pre-Harvest Sprouting Resistance for Japonica Rice Improvement. Plants (Basel). 2021 Aug 19;10(8):1709. doi: 10.3390/plants10081709. PMID: 34451754; PMCID: PMC8401653.*

• 1. User Login
• 2. Search Genotypes
• 3. Query result
• 4. SNP Effects
• 5. Haplotype View
• 6. Downloading the results table
• 7. Add positions in my list
• 8. Annotate SNP List
• 9. Saving the Gene List
• 10. Get Gene set/network